Databases
Structural and force-field databases used in nucleic-acid computational studies.
Structural Databases
Experimental macromolecular structures and curated nucleic-acid coordinates.
RCSB Protein Data Bank
Search and download experimentally determined biomolecular structures.
Visit resource ↗Nucleic Acid Knowledgebase (NAKB)
Successor to the Nucleic Acid Database for experimentally determined nucleic-acid structures.
Visit resource ↗PDBe
European Protein Data Bank portal for macromolecular structures and annotations.
Visit resource ↗RNA & Sequence Resources
Sequence, secondary structure, and RNA-focused resources used in modeling workflows.
RNA STRAND
Curated RNA secondary structures and associated sequence data.
Visit resource ↗NCBI
Sequence, literature, genome, and molecular biology databases.
Visit resource ↗RNA FRABASE
RNA structural fragments and motif-oriented searches.
Visit resource ↗RNAcentral
Integrated access to non-coding RNA sequences, annotations, and sequence search across many RNA databases.
Visit resource ↗Rfam
Curated non-coding RNA families represented by multiple sequence alignments and covariance models.
Visit resource ↗RNA 3D Hub
RNA 3D structure annotations, nonredundant structure sets, and motif-oriented structural resources.
Visit resource ↗Force Fields & Specialized Resources
Parameter and interaction resources that support molecular mechanics studies.
